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Research in Computational Molecular Biology [electronic resource] :12th Annual International Conference, RECOMB 2008, Singapore, March 30 - April 2, 2008. Proceedings /

Contributor(s): Vingron, Martin [editor.] | Wong, Limsoon [editor.] | SpringerLink (Online service).
Material type: materialTypeLabelBookSeries: Lecture Notes in Computer Science: 4955Publisher: Berlin, Heidelberg : Springer Berlin Heidelberg, 2008.Description: XVI, 480 p. online resource.Content type: text Media type: computer Carrier type: online resourceISBN: 9783540788393.Subject(s): Computer science | Data structures (Computer science) | Algorithms | Computer science -- Mathematics | Database management | Artificial intelligence | Bioinformatics | Computer Science | Algorithm Analysis and Problem Complexity | Data Structures | Discrete Mathematics in Computer Science | Database Management | Artificial Intelligence (incl. Robotics) | Computational Biology/BioinformaticsOnline resources: Click here to access online
Contents:
Computational Biology: Its Challenges Past, Present, and Future -- Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast -- CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads -- Reconstructing the Evolutionary History of Complex Human Gene Clusters -- Ab Initio Whole Genome Shotgun Assembly with Mated Short Reads -- Orchestration of DNA Methylation -- BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes -- A Combined Expression-Interaction Model for Inferring the Temporal Activity of Transcription Factors -- A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery -- The Statistical Power of Phylogenetic Motif Models -- Transcriptional Regulation and Cancer Genomics -- Automatic Recognition of Cells (ARC) for 3D Images of C. elegans -- Spectrum Fusion: Using Multiple Mass Spectra for De Novo Peptide Sequencing -- A Fragmentation Event Model for Peptide Identification by Mass Spectrometry -- A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics -- De Novo Sequencing of Nonribosomal Peptides -- Systems Metabolic Engineering -- Protein Function Prediction Based on Patterns in Biological Networks -- Automatic Parameter Learning for Multiple Network Alignment -- An Integrative Network Approach to Map the Transcriptome to the Phenome -- Fast and Accurate Alignment of Multiple Protein Networks -- High-Resolution Modeling of Cellular Signaling Networks -- At the Origin of Life: How Did Folded Proteins Evolve? -- Locating Multiple Gene Duplications through Reconciled Trees -- Rapid and Accurate Protein Side Chain Prediction with Local Backbone Information -- Algorithms for Joint Optimization of Stability and Diversity in Planning Combinatorial Libraries of Chimeric Proteins -- DLIGHT – Lateral Gene Transfer Detection Using Pairwise Evolutionary Distances in a Statistical Framework -- Computation of Median Gene Clusters -- BCL-2: From Translocation to Therapy -- Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles -- Constructing Treatment Portfolios Using Affinity Propagation -- Bubbles: Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs -- More Efficient Algorithms for Closest String and Substring Problems -- Disruption of a Transcriptional Regulatory Pathway Contributes to Phenotypes in Carriers of Ataxia Telangiectasia -- Accounting for Non-genetic Factors Improves the Power of eQTL Studies -- Effects of Genetic Divergence in Identifying Ancestral Origin Using HAPAA -- On the Inference of Ancestries in Admixed Populations -- Increasing Power in Association Studies by Using Linkage Disequilibrium Structure and Molecular Function as Prior Information -- Panel Construction for Mapping in Admixed Populations Via Expected Mutual Information -- Constructing Level-2 Phylogenetic Networks from Triplets -- Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony.
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Computational Biology: Its Challenges Past, Present, and Future -- Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast -- CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads -- Reconstructing the Evolutionary History of Complex Human Gene Clusters -- Ab Initio Whole Genome Shotgun Assembly with Mated Short Reads -- Orchestration of DNA Methylation -- BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes -- A Combined Expression-Interaction Model for Inferring the Temporal Activity of Transcription Factors -- A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery -- The Statistical Power of Phylogenetic Motif Models -- Transcriptional Regulation and Cancer Genomics -- Automatic Recognition of Cells (ARC) for 3D Images of C. elegans -- Spectrum Fusion: Using Multiple Mass Spectra for De Novo Peptide Sequencing -- A Fragmentation Event Model for Peptide Identification by Mass Spectrometry -- A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics -- De Novo Sequencing of Nonribosomal Peptides -- Systems Metabolic Engineering -- Protein Function Prediction Based on Patterns in Biological Networks -- Automatic Parameter Learning for Multiple Network Alignment -- An Integrative Network Approach to Map the Transcriptome to the Phenome -- Fast and Accurate Alignment of Multiple Protein Networks -- High-Resolution Modeling of Cellular Signaling Networks -- At the Origin of Life: How Did Folded Proteins Evolve? -- Locating Multiple Gene Duplications through Reconciled Trees -- Rapid and Accurate Protein Side Chain Prediction with Local Backbone Information -- Algorithms for Joint Optimization of Stability and Diversity in Planning Combinatorial Libraries of Chimeric Proteins -- DLIGHT – Lateral Gene Transfer Detection Using Pairwise Evolutionary Distances in a Statistical Framework -- Computation of Median Gene Clusters -- BCL-2: From Translocation to Therapy -- Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles -- Constructing Treatment Portfolios Using Affinity Propagation -- Bubbles: Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs -- More Efficient Algorithms for Closest String and Substring Problems -- Disruption of a Transcriptional Regulatory Pathway Contributes to Phenotypes in Carriers of Ataxia Telangiectasia -- Accounting for Non-genetic Factors Improves the Power of eQTL Studies -- Effects of Genetic Divergence in Identifying Ancestral Origin Using HAPAA -- On the Inference of Ancestries in Admixed Populations -- Increasing Power in Association Studies by Using Linkage Disequilibrium Structure and Molecular Function as Prior Information -- Panel Construction for Mapping in Admixed Populations Via Expected Mutual Information -- Constructing Level-2 Phylogenetic Networks from Triplets -- Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony.

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