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Combinatorial Pattern Matching [electronic resource] :14th Annual Symposium, CPM 2003 Morelia, Michoacán, Mexico, June 25–27, 2003 Proceedings /

Contributor(s): Baeza-Yates, Ricardo [editor.] | Chávez, Edgar [editor.] | Crochemore, Maxime [editor.] | SpringerLink (Online service).
Material type: materialTypeLabelBookSeries: Lecture Notes in Computer Science: 2676Publisher: Berlin, Heidelberg : Springer Berlin Heidelberg, 2003.Description: XI, 401 p. online resource.Content type: text Media type: computer Carrier type: online resourceISBN: 9783540448884.Subject(s): Mathematics | Coding theory | Algorithms | Computer science -- Mathematics | Information storage and retrieval | Pattern recognition | Discrete mathematics | Mathematics | Discrete Mathematics | Pattern Recognition | Algorithm Analysis and Problem Complexity | Coding and Information Theory | Discrete Mathematics in Computer Science | Information Storage and RetrievalOnline resources: Click here to access online
Contents:
Multiple Genome Alignment: Chaining Algorithms Revisited -- Two-Dimensional Pattern Matching with Rotations -- An Improved Algorithm for Generalized Comparison of Minisatellites -- Optimal Spaced Seeds for Hidden Markov Models, with Application to Homologous Coding Regions -- Fast Lightweight Suffix Array Construction and Checking -- Distributed and Paged Suffix Trees for Large Genetic Databases -- Analysis of Tree Edit Distance Algorithms -- An Exact and Polynomial Distance-Based Algorithm to Reconstruct Single Copy Tandem Duplication Trees -- Average-Optimal Multiple Approximate String Matching -- Optimal Partitions of Strings: A New Class of Burrows-Wheeler Compression Algorithms -- Haplotype Inference by Pure Parsimony -- A Simpler 1.5-Approximation Algorithm for Sorting by Transpositions -- Efficient Data Structures and a New Randomized Approach for Sorting Signed Permutations by Reversals -- Linear-Time Construction of Suffix Arrays -- Space Efficient Linear Time Construction of Suffix Arrays -- Tuning String Matching for Huge Pattern Sets -- Sparse LCS Common Substring Alignment -- On Minimizing Pattern Splitting in Multi-track String Matching -- Alignment between Two Multiple Alignments -- An Effective Algorithm for the Peptide De Novo Sequencing from MS/MS Spectrum -- Pattern Discovery in RNA Secondary Structure Using Affix Trees -- More Efficient Left-to-Right Pattern Matching in Non-sequential Equational Programs -- Complexities of the Centre and Median String Problems -- Extracting Approximate Patterns -- A Fully Linear-Time Approximation Algorithm for Grammar-Based Compression -- Constrained Tree Inclusion -- Working on the Problem of Sorting by Transpositions on Genome Rearrangements -- Efficient Selection of Unique and Popular Oligos for Large EST Databases.
In: Springer eBooks
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Multiple Genome Alignment: Chaining Algorithms Revisited -- Two-Dimensional Pattern Matching with Rotations -- An Improved Algorithm for Generalized Comparison of Minisatellites -- Optimal Spaced Seeds for Hidden Markov Models, with Application to Homologous Coding Regions -- Fast Lightweight Suffix Array Construction and Checking -- Distributed and Paged Suffix Trees for Large Genetic Databases -- Analysis of Tree Edit Distance Algorithms -- An Exact and Polynomial Distance-Based Algorithm to Reconstruct Single Copy Tandem Duplication Trees -- Average-Optimal Multiple Approximate String Matching -- Optimal Partitions of Strings: A New Class of Burrows-Wheeler Compression Algorithms -- Haplotype Inference by Pure Parsimony -- A Simpler 1.5-Approximation Algorithm for Sorting by Transpositions -- Efficient Data Structures and a New Randomized Approach for Sorting Signed Permutations by Reversals -- Linear-Time Construction of Suffix Arrays -- Space Efficient Linear Time Construction of Suffix Arrays -- Tuning String Matching for Huge Pattern Sets -- Sparse LCS Common Substring Alignment -- On Minimizing Pattern Splitting in Multi-track String Matching -- Alignment between Two Multiple Alignments -- An Effective Algorithm for the Peptide De Novo Sequencing from MS/MS Spectrum -- Pattern Discovery in RNA Secondary Structure Using Affix Trees -- More Efficient Left-to-Right Pattern Matching in Non-sequential Equational Programs -- Complexities of the Centre and Median String Problems -- Extracting Approximate Patterns -- A Fully Linear-Time Approximation Algorithm for Grammar-Based Compression -- Constrained Tree Inclusion -- Working on the Problem of Sorting by Transpositions on Genome Rearrangements -- Efficient Selection of Unique and Popular Oligos for Large EST Databases.

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