User-Level Workflow Design A Bioinformatics Perspective /
Lamprecht, Anna-Lena.
User-Level Workflow Design A Bioinformatics Perspective / [electronic resource] : by Anna-Lena Lamprecht. - 1st ed. 2013. - XXII, 223 p. 84 illus. online resource. - Programming and Software Engineering, 8311 2945-9168 ; . - Programming and Software Engineering, 8311 .
The Bio-jETI Framework -- Phylogenetic Analysis Workflows -- GeneFisher-P -- FiatFlux-P -- Microarray Data Analysis Pipelines.
The continuous trend in computer science to lift programming to higher abstraction levels increases scalability and opens programming to a wider public. In particular, service-oriented programming and the support of semantics-based frameworks make application development accessible to users with almost no programming expertise. This monograph establishes requirement-centric scientific workflow design as an instance of consequent constraint-driven development. Requirements formulated in terms of user-level constraints are automatically transformed into running applications using temporal logic-based synthesis technology. The impact of this approach is illustrated by applying it to four very different bioinformatics scenarios: phylogenetic analysis, the dedicated GeneFisher-P scenario, the FiatFlux-P scenario, and microarray data analyses.
9783642453892
10.1007/978-3-642-45389-2 doi
Software engineering.
Computer science.
Computer simulation.
Application software.
Bioinformatics.
Software Engineering.
Computer Science Logic and Foundations of Programming.
Computer Modelling.
Computer and Information Systems Applications.
Computational and Systems Biology.
QA76.758
005.1
User-Level Workflow Design A Bioinformatics Perspective / [electronic resource] : by Anna-Lena Lamprecht. - 1st ed. 2013. - XXII, 223 p. 84 illus. online resource. - Programming and Software Engineering, 8311 2945-9168 ; . - Programming and Software Engineering, 8311 .
The Bio-jETI Framework -- Phylogenetic Analysis Workflows -- GeneFisher-P -- FiatFlux-P -- Microarray Data Analysis Pipelines.
The continuous trend in computer science to lift programming to higher abstraction levels increases scalability and opens programming to a wider public. In particular, service-oriented programming and the support of semantics-based frameworks make application development accessible to users with almost no programming expertise. This monograph establishes requirement-centric scientific workflow design as an instance of consequent constraint-driven development. Requirements formulated in terms of user-level constraints are automatically transformed into running applications using temporal logic-based synthesis technology. The impact of this approach is illustrated by applying it to four very different bioinformatics scenarios: phylogenetic analysis, the dedicated GeneFisher-P scenario, the FiatFlux-P scenario, and microarray data analyses.
9783642453892
10.1007/978-3-642-45389-2 doi
Software engineering.
Computer science.
Computer simulation.
Application software.
Bioinformatics.
Software Engineering.
Computer Science Logic and Foundations of Programming.
Computer Modelling.
Computer and Information Systems Applications.
Computational and Systems Biology.
QA76.758
005.1