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Computational Methods in Systems Biology 16th International Conference, CMSB 2018, Brno, Czech Republic, September 12-14, 2018, Proceedings / [electronic resource] : edited by Milan Češka, David Šafránek. - 1st ed. 2018. - Cham : Springer International Publishing : Imprint: Springer, 2018. - XXIII, 326 p. 88 illus. online resource. - Lecture Notes in Bioinformatics ; 11095 . - Lecture Notes in Bioinformatics ; 11095 .

Modeling and Engineering Promoters with Pre-defined RNA Production Dynamics in Escherichia coli -- Deep Abstractions of Chemical Reaction Networks -- Derivation of A Biomass Proxy for Dynamic Analysis of Whole Genome Metabolic Models -- Computing Diverse Boolean Networks from Phosphoproteomic Time Series Data -- Characterization of the Experimentally Observed Clustering of VEGF Receptors -- Synthesis for Vesicle Traffic Systems -- Formal Analysis of Network Motifs -- Buffering Gene Expression Noise by microRNA Based Feed Forward Regulation -- Stochastic Rate Parameter Inference Using the Cross-Entropy Method -- Experimental Biological Protocols with Formal Semantics -- Robust Data-Driven Control of Artificial Pancreas Systems Using Neural Networks -- Programming Substrate-Independent Kinetic Barriers with Thermodynamic Binding Networks -- A Trace Query Language for Rule-based Models -- Inferring Mechanism of Action of an Unknown Compound from Time Series Omics Data -- Composable Rate-Independent Computation in Continuous Chemical Reaction Networks -- ASSA-PBN 3.0: Analysing Context-sensitive Probabilistic Boolean Networks -- KaSa: A Static Analyzer for Kappa -- On Robustness Computation and Optimization in BIOCHAM-4 -- LNA++: Linear Noise Approximation with First and Second Order Sensitivities -- Reparametrizing the Sigmoid Model of Gene Regulation for Bayesian Inference -- On the Full Control of Boolean Networks -- Systems Metagenomics: Applying Systems Biology Thinking to Human Microbiome Analysis.

Chapters 3, 9 and 10 are available open access under a Creative Commons Attribution 4.0 International License via


10.1007/978-3-319-99429-1 doi

Computer Science
Artificial intelligence.
Software engineering.
Computer science.
Logic design.
Computational Biology/Bioinformatics.
Artificial Intelligence.
Software Engineering.
Mathematical Logic and Formal Languages.
Logics and Meanings of Programs.



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